Index

_

__call__() (dycove.sim.engines.ANUGA_baptist.Baptist_operator method) __init__() (dycove.sim.base.HydroEngineBase method) (dycove.sim.base.HydroSimulationBase method) (dycove.sim.coupler.VegetationCoupler method) (dycove.sim.engines.ANUGA_baptist.Baptist_operator method) (dycove.sim.engines.ANUGA_hydro.ANUGA method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFM method) (dycove.sim.engines.DFM_hydro.DFMEngine method) (dycove.sim.outputs.OutputManager method) (dycove.sim.simulation_data.HydrodynamicStats method) (dycove.sim.simulation_data.SimulationTimeState method) (dycove.sim.vegetation.MultipleVegetationSpecies method) (dycove.sim.vegetation.SharedVegMethods method) (dycove.sim.vegetation.VegetationSpecies method) (dycove.sim.vegetation_data.VegCohort method) (dycove.sim.vegetation_data.VegetationAttributes method) (dycove.utils.model_loader.ANUGAMapLoader method) (dycove.utils.model_loader.BaseMapLoader method) (dycove.utils.model_loader.DFMMapLoader method) (dycove.utils.plotting.ModelPlotter method) (dycove.utils.simulation_reporting.Reporter method)

__post_init__() (dycove.sim.simulation_data.SimulationTimeState method)

A

add_dll_directories() (dycove.sim.engines.DFM_hydro.DFMEngine method) add_extforcefile_to_mdu() (dycove.sim.engines.DFM_hydro.DFMEngine method) add_veg_module_to_mdu() (dycove.sim.engines.DFM_hydro.DFMEngine method) ANUGA (class in dycove.sim.engines.ANUGA_hydro)

AnugaEngine (class in dycove.sim.engines.ANUGA_hydro) ANUGAMapLoader (class in dycove.utils.model_loader) apply_growth() (dycove.sim.coupler.VegetationCoupler method) apply_mortality() (dycove.sim.vegetation.VegetationSpecies method)

B

Baptist_operator (class in dycove.sim.engines.ANUGA_baptist) BaseMapLoader (class in dycove.utils.model_loader)

bedlevel_0 (dycove.sim.simulation_data.HydrodynamicStats attribute) bedlevel_diff (dycove.sim.simulation_data.HydrodynamicStats attribute) bedlevel_f (dycove.sim.simulation_data.HydrodynamicStats attribute)

C

check_final_index() (dycove.utils.model_loader.ANUGAMapLoader method) (dycove.utils.model_loader.BaseMapLoader method) (dycove.utils.model_loader.DFMMapLoader method) check_simulation_inputs() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method) cleanup() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method) cohort_indexing() (dycove.sim.outputs.OutputManager method) colonization() (dycove.sim.vegetation.VegetationSpecies method) compute_days_per_year() (dycove.sim.simulation_data.SimulationTimeState method)

compute_ecofac() (dycove.sim.simulation_data.SimulationTimeState method) compute_growth_rates() (dycove.sim.vegetation_data.VegetationAttributes method) compute_mortality() (dycove.sim.coupler.VegetationCoupler method) compute_new_fraction() (dycove.sim.vegetation.VegetationSpecies method) compute_time_conversions() (dycove.sim.simulation_data.SimulationTimeState method) compute_veg_model_quantities() (dycove.sim.coupler.VegetationCoupler method) (dycove.sim.vegetation.MultipleVegetationSpecies method) (dycove.sim.vegetation.SharedVegMethods method) (dycove.sim.vegetation.VegetationSpecies method) create_extforcefile() (dycove.sim.engines.DFM_hydro.DFMEngine method) create_nn_interpFunc() (in module dycove.utils.plotting) create_seed_fraction_mask() (dycove.sim.vegetation.VegetationSpecies method) create_veg_xyz_files() (dycove.sim.engines.DFM_hydro.DFMEngine method)

D

days_per_year (dycove.sim.simulation_data.SimulationTimeState attribute) density (dycove.sim.vegetation_data.VegCohort attribute) DFM (class in dycove.sim.engines.DFM_hydro)

DFMEngine (class in dycove.sim.engines.DFM_hydro) DFMMapLoader (class in dycove.utils.model_loader) do_colonization() (dycove.sim.coupler.VegetationCoupler method) dry_frac() (dycove.sim.simulation_data.HydrodynamicStats method)

E

eco_hydro_loop() (dycove.sim.base.HydroSimulationBase method) (dycove.sim.engines.ANUGA_hydro.ANUGA method) (dycove.sim.engines.DFM_hydro.DFM method)

eco_year (dycove.sim.simulation_data.SimulationTimeState attribute) ets (dycove.sim.simulation_data.SimulationTimeState attribute)

F

fl_dr (dycove.sim.simulation_data.HydrodynamicStats attribute) flood_counts (dycove.sim.simulation_data.HydrodynamicStats attribute)

flood_frac() (dycove.sim.simulation_data.HydrodynamicStats method) fraction (dycove.sim.vegetation_data.VegCohort attribute)

G

get_cell_count() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method) get_drag() (dycove.sim.vegetation.MultipleVegetationSpecies method) get_elevation() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method) get_grid_coords() (dycove.utils.plotting.ModelPlotter method) get_model_inputs() (dycove.sim.engines.DFM_hydro.DFMEngine method) get_morphodynamic_inputs() (dycove.sim.engines.DFM_hydro.DFMEngine method) get_rank() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method)

get_refdate() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method) get_time_breakdown() (dycove.utils.plotting.ModelPlotter method) get_vegetation() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method) get_velocity_and_depth() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method)

H

h_max (dycove.sim.simulation_data.HydrodynamicStats attribute) h_min (dycove.sim.simulation_data.HydrodynamicStats attribute) hydro_interval (dycove.sim.simulation_data.SimulationTimeState attribute) hydro_sim_days (dycove.sim.simulation_data.SimulationTimeState attribute) hydro_step() (dycove.sim.base.HydroSimulationBase method) (dycove.sim.engines.ANUGA_hydro.ANUGA method) (dycove.sim.engines.DFM_hydro.DFM method)

HydrodynamicStats (class in dycove.sim.simulation_data) HydroEngineBase (class in dycove.sim.base) HydroSimulationBase (class in dycove.sim.base) hydrotime_date (dycove.sim.simulation_data.SimulationTimeState attribute) hydrotime_seconds (dycove.sim.simulation_data.SimulationTimeState attribute)

I

initialize() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method)

is_parallel() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method)

L

lifestage (dycove.sim.vegetation_data.VegCohort attribute) lifestage_update() (dycove.sim.coupler.VegetationCoupler method)

lifestage_year (dycove.sim.vegetation_data.VegCohort attribute) linear_mortality_func() (dycove.sim.vegetation.VegetationSpecies static method) load_vegetation_attributes() (dycove.sim.vegetation.VegetationSpecies static method)

M

merge_local_to_global() (dycove.sim.engines.ANUGA_hydro.AnugaEngine static method) merge_parallel_veg() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method) ModelPlotter (class in dycove.utils.plotting)

morfac (dycove.sim.simulation_data.SimulationTimeState attribute) mortality() (dycove.sim.vegetation.VegetationSpecies method) mortality_hydrodynamic() (dycove.sim.vegetation.VegetationSpecies method) mortality_morphodynamic() (dycove.sim.vegetation.VegetationSpecies method) MultipleVegetationSpecies (class in dycove.sim.vegetation)

N

n_cells (dycove.sim.simulation_data.HydrodynamicStats attribute) n_ets (dycove.sim.simulation_data.SimulationTimeState attribute) n_hydro_steps (dycove.sim.simulation_data.SimulationTimeState attribute)

n_hydro_substeps (dycove.sim.simulation_data.HydrodynamicStats attribute) (dycove.sim.simulation_data.SimulationTimeState attribute) n_veg_steps (dycove.sim.simulation_data.SimulationTimeState attribute) name (dycove.sim.vegetation_data.VegCohort attribute)

O

open_bmi_wrappers() (dycove.sim.engines.DFM_hydro.DFMEngine method)

OutputManager (class in dycove.sim.outputs)

P

parallel_safe() (dycove.sim.engines.ANUGA_baptist.Baptist_operator method) print_model_time_info() (dycove.utils.simulation_reporting.Reporter method)

print_runtime_updates() (dycove.utils.simulation_reporting.Reporter method) Properties (dycove.sim.simulation_data.HydrodynamicStats attribute) push_veg_to_hydro() (dycove.sim.coupler.VegetationCoupler method)

R

reconcile_vegetation_output() (dycove.sim.outputs.OutputManager method) refdate (dycove.sim.simulation_data.SimulationTimeState attribute) Reporter (class in dycove.utils.simulation_reporting) reset() (dycove.sim.simulation_data.HydrodynamicStats method)

root_growth() (dycove.sim.vegetation.VegetationSpecies method) run_simulation() (dycove.sim.base.HydroSimulationBase method) (dycove.sim.engines.ANUGA_hydro.ANUGA method) (dycove.sim.engines.DFM_hydro.DFM method)

S

save_netcdf() (dycove.sim.outputs.OutputManager method) save_simulation_metadata() (dycove.sim.outputs.OutputManager method) save_vegetation_step() (dycove.sim.outputs.OutputManager method) set_veg_quantity() (dycove.sim.engines.ANUGA_baptist.Baptist_operator method) set_vegetation() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_baptist.Baptist_operator method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method)

SharedVegMethods (class in dycove.sim.vegetation) sim_time (dycove.sim.simulation_data.SimulationTimeState attribute) sim_time_unit (dycove.sim.simulation_data.SimulationTimeState attribute) SimulationTimeState (class in dycove.sim.simulation_data) stemdiam_growth() (dycove.sim.vegetation.VegetationSpecies method) stemheight_growth() (dycove.sim.vegetation.VegetationSpecies method) step() (dycove.sim.base.HydroEngineBase method) (dycove.sim.engines.ANUGA_hydro.AnugaEngine method) (dycove.sim.engines.DFM_hydro.DFMEngine method)

T

time_0 (dycove.sim.simulation_data.SimulationTimeState attribute)

times_elapsed (dycove.sim.simulation_data.SimulationTimeState attribute)

U

update() (dycove.sim.coupler.VegetationCoupler method) (dycove.sim.simulation_data.HydrodynamicStats method) update_coefficients() (dycove.sim.engines.ANUGA_baptist.Baptist_operator method)

update_file_counts() (dycove.sim.outputs.OutputManager method) update_lifestage_and_stemdensity() (dycove.sim.vegetation.VegetationSpecies method) update_quantities() (dycove.sim.engines.ANUGA_baptist.Baptist_operator method)

V

v_max_95th() (dycove.sim.simulation_data.HydrodynamicStats method) v_maxs (dycove.sim.simulation_data.HydrodynamicStats attribute) validate_input_list_lengths() (dycove.sim.vegetation_data.VegetationAttributes method) validate_mortality_limits() (dycove.sim.vegetation_data.VegetationAttributes method) veg_active (dycove.sim.simulation_data.SimulationTimeState attribute) veg_interval (dycove.sim.simulation_data.SimulationTimeState attribute)

veg_sim_years (dycove.sim.simulation_data.SimulationTimeState attribute) VegCohort (class in dycove.sim.vegetation_data) vegetation_file_check() (dycove.sim.engines.DFM_hydro.DFMEngine method) VegetationAttributes (class in dycove.sim.vegetation_data) VegetationCoupler (class in dycove.sim.coupler) VegetationSpecies (class in dycove.sim.vegetation) vegfac (dycove.sim.simulation_data.SimulationTimeState attribute)

W

write_modified_mdu() (dycove.sim.engines.DFM_hydro.DFMEngine method)